J5_8BRM_008
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CAUG*CGGACGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8BRM|1|St|U|55, 8BRM|1|St|A|80, 8BRM|1|St|C|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BRM_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1066
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BRM|1|St|C|53
8BRM|1|St|A|54
8BRM|1|St|U|55
8BRM|1|St|G|56
*
8BRM|1|St|C|77
8BRM|1|St|G|78
8BRM|1|St|G|79
8BRM|1|St|A|80
8BRM|1|St|C|81
8BRM|1|St|G|82
8BRM|1|St|G|83
8BRM|1|St|C|84
*
8BRM|1|St|G|299
8BRM|1|St|A|300
8BRM|1|St|G|301
*
8BRM|1|St|C|322
8BRM|1|St|A|323
8BRM|1|St|C|324
*
8BRM|1|St|G|335
8BRM|1|St|G|336
8BRM|1|St|C|337
8BRM|1|St|A|338
8BRM|1|St|G|339
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain LW
- Ribosomal protein L23
- Chain SE
- Ribosomal protein S4
- Chain SG
- Ribosomal protein S6
- Chain SI
- Ribosomal protein S8
- Chain SK
- Ribosomal protein S9
- Chain Sb
- Ribosomal protein S24
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