J5_8BTK_003
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8BTK|1|A2|U|55, 8BTK|1|A2|A|92, 8BTK|1|A2|C|473
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BTK_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1126
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BTK|1|A2|C|53
8BTK|1|A2|A|54
8BTK|1|A2|U|55
8BTK|1|A2|G|56
*
8BTK|1|A2|C|89
8BTK|1|A2|G|90
8BTK|1|A2|A|91
8BTK|1|A2|A|92
8BTK|1|A2|PSU|93
8BTK|1|A2|G|94
8BTK|1|A2|G|95
8BTK|1|A2|C|96
*
8BTK|1|A2|G|435
8BTK|1|A2|A|436
8BTK|1|A2|OMG|437
*
8BTK|1|A2|C|458
8BTK|1|A2|A|459
8BTK|1|A2|C|460
*
8BTK|1|A2|G|471
8BTK|1|A2|G|472
8BTK|1|A2|C|473
8BTK|1|A2|A|474
8BTK|1|A2|G|475
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- 40S ribosomal protein S4
- Chain Af
- 40S ribosomal protein S6
- Chain Ah
- 40S ribosomal protein S8
- Chain Ai
- Ribosomal protein S9 (Predicted)
- Chain Ax
- 40S ribosomal protein S24
- Chain BV
- Ribosomal protein L23
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