J5_8C00_002

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C00|1|2|C|31
8C00|1|2|U|32
8C00|1|2|U|33
8C00|1|2|G|34
8C00|1|2|U|35
*
8C00|1|2|A|473
8C00|1|2|A|474
8C00|1|2|A|475
8C00|1|2|U|476
8C00|1|2|A|477
8C00|1|2|A|478
8C00|1|2|C|479
*
8C00|1|2|G|509
8C00|1|2|G|510
8C00|1|2|A|511
8C00|1|2|A|512
8C00|1|2|U|513
8C00|1|2|G|514
8C00|1|2|A|515
8C00|1|2|G|516
*
8C00|1|2|C|536
8C00|1|2|G|537
8C00|1|2|A|538
8C00|1|2|G|539
8C00|1|2|G|540
8C00|1|2|A|541
8C00|1|2|A|542
8C00|1|2|C|543
8C00|1|2|A|544
8C00|1|2|A|545
8C00|1|2|U|546
*
8C00|1|2|A|592
8C00|1|2|U|593
8C00|1|2|A|594
8C00|1|2|G|595

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A

Chain t

Ribosome biogenesis protein TSR1