J5_8C3A_005

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

8C3A|1|1|A|2382, 8C3A|1|1|A|2789, 8C3A|1|1|U|2845, 8C3A|1|1|G|2846, 8C3A|1|1|U|2950, 8C3A|1|1|U|2951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C3A|1|1|A|2377
8C3A|1|1|G|2378
8C3A|1|1|A|2379
8C3A|1|1|A|2380
8C3A|1|1|G|2381
8C3A|1|1|A|2382
8C3A|1|1|C|2383
8C3A|1|1|C|2384
*
8C3A|1|1|G|2787
8C3A|1|1|G|2788
8C3A|1|1|A|2789
8C3A|1|1|U|2790
8C3A|1|1|A|2791
8C3A|1|1|A|2792
8C3A|1|1|C|2793
8C3A|1|1|U|2794
8C3A|1|1|G|2795
*
8C3A|1|1|C|2839
8C3A|1|1|U|2840
8C3A|1|1|U|2841
8C3A|1|1|C|2842
8C3A|1|1|G|2843
8C3A|1|1|A|2844
8C3A|1|1|U|2845
8C3A|1|1|G|2846
8C3A|1|1|U|2847
8C3A|1|1|C|2848
*
8C3A|1|1|G|2923
8C3A|1|1|G|2924
8C3A|1|1|U|2925
8C3A|1|1|U|2926
8C3A|1|1|U|2927
8C3A|1|1|A|2928
8C3A|1|1|G|2929
*
8C3A|1|1|U|2947
8C3A|1|1|A|2948
8C3A|1|1|G|2949
8C3A|1|1|U|2950
8C3A|1|1|U|2951
8C3A|1|1|U|2952

Current chains

Chain 1

25S

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AC

60S ribosomal protein L29

Chain j

60S ribosomal protein L2-B

Chain k

60S ribosomal protein L3

Chain l

60S ribosomal protein L4-B