J5_8C3A_010
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8C3A|1|AS|G|2094, 8C3A|1|AS|G|2099
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8C3A_010 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0414
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8C3A|1|AS|G|1902
8C3A|1|AS|C|1903
8C3A|1|AS|A|1904
8C3A|1|AS|A|1905
8C3A|1|AS|A|1906
8C3A|1|AS|A|1907
8C3A|1|AS|U|1908
8C3A|1|AS|A|1909
8C3A|1|AS|G|1910
*
8C3A|1|AS|U|1934
8C3A|1|AS|G|1935
*
8C3A|1|AS|U|2087
8C3A|1|AS|G|2088
*
8C3A|1|AS|C|2092
8C3A|1|AS|G|2093
8C3A|1|AS|G|2094
8C3A|1|AS|A|2095
8C3A|1|AS|C|2096
8C3A|1|AS|A|2097
8C3A|1|AS|A|2098
8C3A|1|AS|G|2099
8C3A|1|AS|G|2100
*
8C3A|1|AS|C|2309
8C3A|1|AS|A|2310
8C3A|1|AS|C|2311
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AX
- 60S ribosomal protein L3
- Chain BM
- 60S ribosomal protein L19-A
- Chain BQ
- 60S ribosomal protein L23-A
- Chain BR
- 60S ribosomal protein L24-A
- Chain CM
- Small subunit ribosomal RNA; SSU rRNA
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