J5_8C3A_011
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8C3A|1|AS|A|2382, 8C3A|1|AS|A|2789, 8C3A|1|AS|G|2846, 8C3A|1|AS|U|2847, 8C3A|1|AS|U|2926, 8C3A|1|AS|U|2950, 8C3A|1|AS|U|2951
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8C3A|1|AS|A|2377
8C3A|1|AS|G|2378
8C3A|1|AS|A|2379
8C3A|1|AS|A|2380
8C3A|1|AS|G|2381
8C3A|1|AS|A|2382
8C3A|1|AS|C|2383
8C3A|1|AS|C|2384
*
8C3A|1|AS|G|2787
8C3A|1|AS|G|2788
8C3A|1|AS|A|2789
8C3A|1|AS|U|2790
8C3A|1|AS|A|2791
8C3A|1|AS|A|2792
8C3A|1|AS|C|2793
8C3A|1|AS|U|2794
8C3A|1|AS|G|2795
*
8C3A|1|AS|C|2839
8C3A|1|AS|U|2840
8C3A|1|AS|U|2841
8C3A|1|AS|C|2842
8C3A|1|AS|G|2843
8C3A|1|AS|A|2844
8C3A|1|AS|U|2845
8C3A|1|AS|G|2846
8C3A|1|AS|U|2847
8C3A|1|AS|C|2848
*
8C3A|1|AS|G|2923
8C3A|1|AS|G|2924
8C3A|1|AS|U|2925
8C3A|1|AS|U|2926
8C3A|1|AS|U|2927
8C3A|1|AS|A|2928
8C3A|1|AS|G|2929
*
8C3A|1|AS|U|2947
8C3A|1|AS|A|2948
8C3A|1|AS|G|2949
8C3A|1|AS|U|2950
8C3A|1|AS|U|2951
8C3A|1|AS|U|2952
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AW
- 60S ribosomal protein L2-B
- Chain AX
- 60S ribosomal protein L3
- Chain AY
- 60S ribosomal protein L4-B
- Chain BK
- Ribosomal protein L22
- Chain BV
- 60S ribosomal protein L28
- Chain BW
- 60S ribosomal protein L29
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