J5_8C3A_016
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUAGUACCUUACUACUU*AUGCUUAAAA*UG*CGAAUC*GAUGGUU
- Length
- 42 nucleotides
- Bulged bases
- 8C3A|1|B|U|132, 8C3A|1|B|U|133, 8C3A|1|B|A|134, 8C3A|1|B|C|135, 8C3A|1|B|C|138, 8C3A|1|B|U|139, 8C3A|1|B|U|176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8C3A|1|B|A|124
8C3A|1|B|U|125
8C3A|1|B|A|126
8C3A|1|B|G|127
8C3A|1|B|U|128
8C3A|1|B|A|129
8C3A|1|B|C|130
8C3A|1|B|C|131
8C3A|1|B|U|132
8C3A|1|B|U|133
8C3A|1|B|A|134
8C3A|1|B|C|135
8C3A|1|B|U|136
8C3A|1|B|A|137
8C3A|1|B|C|138
8C3A|1|B|U|139
8C3A|1|B|U|140
*
8C3A|1|B|A|171
8C3A|1|B|U|172
8C3A|1|B|G|173
8C3A|1|B|C|174
8C3A|1|B|U|175
8C3A|1|B|U|176
8C3A|1|B|A|177
8C3A|1|B|A|178
8C3A|1|B|A|179
8C3A|1|B|A|180
*
8C3A|1|B|U|201
8C3A|1|B|G|202
*
8C3A|1|B|C|261
8C3A|1|B|G|262
8C3A|1|B|A|263
8C3A|1|B|A|264
8C3A|1|B|U|265
8C3A|1|B|C|266
*
8C3A|1|B|G|285
8C3A|1|B|A|286
8C3A|1|B|U|287
8C3A|1|B|G|288
8C3A|1|B|G|289
8C3A|1|B|U|290
8C3A|1|B|U|291
Current chains
- Chain B
- 18S
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain I
- 40S ribosomal protein S6
- Chain K
- 40S ribosomal protein S8
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