J5_8C3A_023
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACCUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 37 nucleotides
- Bulged bases
- 8C3A|1|CM|U|637, 8C3A|1|CM|U|692, 8C3A|1|CM|C|694, 8C3A|1|CM|U|797, 8C3A|1|CM|G|799, 8C3A|1|CM|A|841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_11070.1
- Basepair signature
- cWW-F-F-F-F-F-tWW-cWW-cWW-cWW-F-F-F-cSH-cWW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8C3A|1|CM|A|634
8C3A|1|CM|C|635
8C3A|1|CM|C|636
8C3A|1|CM|U|637
8C3A|1|CM|U|638
8C3A|1|CM|G|639
*
8C3A|1|CM|U|691
8C3A|1|CM|U|692
8C3A|1|CM|U|693
8C3A|1|CM|C|694
8C3A|1|CM|C|695
8C3A|1|CM|U|696
8C3A|1|CM|U|697
*
8C3A|1|CM|G|724
8C3A|1|CM|A|725
8C3A|1|CM|C|726
8C3A|1|CM|U|727
8C3A|1|CM|U|728
8C3A|1|CM|U|729
*
8C3A|1|CM|A|791
8C3A|1|CM|U|792
8C3A|1|CM|A|793
8C3A|1|CM|G|794
8C3A|1|CM|A|795
8C3A|1|CM|A|796
8C3A|1|CM|U|797
8C3A|1|CM|A|798
8C3A|1|CM|G|799
8C3A|1|CM|G|800
8C3A|1|CM|A|801
*
8C3A|1|CM|U|839
8C3A|1|CM|A|840
8C3A|1|CM|A|841
8C3A|1|CM|U|842
8C3A|1|CM|G|843
8C3A|1|CM|A|844
8C3A|1|CM|U|845
Current chains
- Chain CM
- 18S
Nearby chains
- Chain BM
- 60S ribosomal protein L19-A
- Chain CR
- 40S ribosomal protein S4
- Chain CU
- 40S ribosomal protein S7
- Chain CY
- 40S ribosomal protein S11A
- Chain DA
- 40S ribosomal protein S13
- Chain DJ
- 40S ribosomal protein S22-A
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