J5_8C8Y_004

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8C8Y|1|A|U|1758, 8C8Y|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8C8Y_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1023

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8C8Y|1|A|G|1674
8C8Y|1|A|C|1675
8C8Y|1|A|A|1676
8C8Y|1|A|A|1677
8C8Y|1|A|A|1678
8C8Y|1|A|A|1679
8C8Y|1|A|U|1680
8C8Y|1|A|G|1681
8C8Y|1|A|G|1682
*
8C8Y|1|A|C|1706
8C8Y|1|A|G|1707
*
8C8Y|1|A|U|1751
8C8Y|1|A|C|1752
*
8C8Y|1|A|G|1756
8C8Y|1|A|A|1757
8C8Y|1|A|U|1758
8C8Y|1|A|A|1759
8C8Y|1|A|C|1760
8C8Y|1|A|C|1761
8C8Y|1|A|A|1762
8C8Y|1|A|G|1763
8C8Y|1|A|C|1764
*
8C8Y|1|A|G|1988
8C8Y|1|A|G|1989
8C8Y|1|A|C|1990

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19