J5_8C90_004

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8C90|1|A|A|1757, 8C90|1|A|U|1758, 8C90|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8C90_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.3227

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8C90|1|A|G|1674
8C90|1|A|C|1675
8C90|1|A|A|1676
8C90|1|A|A|1677
8C90|1|A|A|1678
8C90|1|A|A|1679
8C90|1|A|U|1680
8C90|1|A|G|1681
8C90|1|A|G|1682
*
8C90|1|A|C|1706
8C90|1|A|G|1707
*
8C90|1|A|U|1751
8C90|1|A|C|1752
*
8C90|1|A|G|1756
8C90|1|A|A|1757
8C90|1|A|U|1758
8C90|1|A|A|1759
8C90|1|A|C|1760
8C90|1|A|C|1761
8C90|1|A|A|1762
8C90|1|A|G|1763
8C90|1|A|C|1764
*
8C90|1|A|G|1988
8C90|1|A|G|1989
8C90|1|A|C|1990

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19