J5_8C93_001

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAUCA*UGAGG

Length

26 nucleotides

Bulged bases

8C93|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C93|1|A|C|47
8C93|1|A|G|48
8C93|1|A|A|49
8C93|1|A|U|50
8C93|1|A|G|51
8C93|1|A|A|52
8C93|1|A|A|53
8C93|1|A|G|54
*
8C93|1|A|C|116
8C93|1|A|G|117
8C93|1|A|A|118
8C93|1|A|A|119
8C93|1|A|U|120
8C93|1|A|G|121
*
8C93|1|A|C|130
8C93|1|A|A|131
*
8C93|1|A|U|148
8C93|1|A|A|149
8C93|1|A|U|150
8C93|1|A|C|151
8C93|1|A|A|152
*
8C93|1|A|U|174
8C93|1|A|G|175
8C93|1|A|A|176
8C93|1|A|G|177
8C93|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34