J5_8C94_004

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAUC*GAGG

Length

24 nucleotides

Bulged bases

8C94|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C94|1|A|C|47
8C94|1|A|G|48
8C94|1|A|A|49
8C94|1|A|U|50
8C94|1|A|G|51
8C94|1|A|A|52
8C94|1|A|A|53
8C94|1|A|G|54
*
8C94|1|A|C|116
8C94|1|A|G|117
8C94|1|A|A|118
8C94|1|A|A|119
8C94|1|A|U|120
8C94|1|A|G|121
*
8C94|1|A|C|130
8C94|1|A|A|131
*
8C94|1|A|U|148
8C94|1|A|A|149
8C94|1|A|U|150
8C94|1|A|C|151
*
8C94|1|A|G|175
8C94|1|A|A|176
8C94|1|A|G|177
8C94|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34