J5_8CAH_003
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8CAH|1|2|A|93, 8CAH|1|2|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CAH_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.057
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CAH|1|2|C|54
8CAH|1|2|A|55
8CAH|1|2|U|56
8CAH|1|2|G|57
*
8CAH|1|2|C|90
8CAH|1|2|G|91
8CAH|1|2|A|92
8CAH|1|2|A|93
8CAH|1|2|U|94
8CAH|1|2|G|95
8CAH|1|2|G|96
8CAH|1|2|C|97
*
8CAH|1|2|G|386
8CAH|1|2|A|387
8CAH|1|2|G|388
*
8CAH|1|2|C|409
8CAH|1|2|A|410
8CAH|1|2|C|411
*
8CAH|1|2|G|422
8CAH|1|2|G|423
8CAH|1|2|C|424
8CAH|1|2|A|425
8CAH|1|2|G|426
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- 40S ribosomal protein S4-B
- Chain T
- 40S ribosomal protein S6-B
- Chain V
- 40S ribosomal protein S8-A
- Chain W
- 40S ribosomal protein S9-A
- Chain d
- 40S ribosomal protein S24-A
- Chain x
- RLI1 isoform 1
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