J5_8CCS_001
3D structure
- PDB id
- 8CCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.97 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8CCS|1|CC|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CCS_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0468
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CCS|1|AA|A|20
8CCS|1|AA|G|21
8CCS|1|AA|G|22
*
8CCS|1|CC|C|35
8CCS|1|CC|G|36
8CCS|1|CC|A|37
8CCS|1|CC|U|38
8CCS|1|CC|G|39
8CCS|1|CC|A|40
8CCS|1|CC|A|41
8CCS|1|CC|G|42
*
8CCS|1|CC|U|102
8CCS|1|CC|G|103
8CCS|1|CC|A|104
8CCS|1|CC|A|105
8CCS|1|CC|C|106
8CCS|1|CC|G|107
*
8CCS|1|CC|C|115
8CCS|1|CC|G|116
*
8CCS|1|CC|C|137
8CCS|1|CC|A|138
8CCS|1|CC|U|139
Current chains
- Chain AA
- 25S ribosomal RNA
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain J
- 60S ribosomal protein L25
- Chain QQ
- 60S ribosomal protein L15-A
- Chain T
- 60S ribosomal protein L35-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
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