J5_8CCS_003

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

8CCS|1|AA|U|719, 8CCS|1|AA|A|784, 8CCS|1|AA|G|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CCS_003 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.0566

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_56629.1

Basepair signature

cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8CCS|1|AA|C|675
8CCS|1|AA|G|676
8CCS|1|AA|A|677
8CCS|1|AA|G|678
*
8CCS|1|AA|C|702
8CCS|1|AA|G|703
8CCS|1|AA|U|704
8CCS|1|AA|A|705
8CCS|1|AA|A|706
*
8CCS|1|AA|U|713
8CCS|1|AA|G|714
8CCS|1|AA|A|715
8CCS|1|AA|A|716
8CCS|1|AA|C|717
8CCS|1|AA|G|718
8CCS|1|AA|U|719
8CCS|1|AA|A|720
8CCS|1|AA|G|721
*
8CCS|1|AA|C|749
8CCS|1|AA|G|750
8CCS|1|AA|A|751
*
8CCS|1|AA|U|782
8CCS|1|AA|A|783
8CCS|1|AA|A|784
8CCS|1|AA|G|785
8CCS|1|AA|A|786
8CCS|1|AA|G|787

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain F

60S ribosomal protein L21-A

Chain GG

60S ribosomal protein L4-A

Chain M

60S ribosomal protein L28

Chain N

60S ribosomal protein L29

Chain OO

60S ribosomal protein L13-A

Chain U

60S ribosomal protein L36-A