J5_8CDR_009
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8CDR|1|c|A|93, 8CDR|1|c|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CDR_009 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.043
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CDR|1|c|C|54
8CDR|1|c|A|55
8CDR|1|c|U|56
8CDR|1|c|G|57
*
8CDR|1|c|C|90
8CDR|1|c|G|91
8CDR|1|c|A|92
8CDR|1|c|A|93
8CDR|1|c|U|94
8CDR|1|c|G|95
8CDR|1|c|G|96
8CDR|1|c|C|97
*
8CDR|1|c|G|386
8CDR|1|c|A|387
8CDR|1|c|G|388
*
8CDR|1|c|C|409
8CDR|1|c|A|410
8CDR|1|c|C|411
*
8CDR|1|c|G|422
8CDR|1|c|G|423
8CDR|1|c|C|424
8CDR|1|c|A|425
8CDR|1|c|G|426
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S24-A
- Chain H
- 60S ribosomal protein L23-A
- Chain h
- 40S ribosomal protein S4-A
- Chain j
- 40S ribosomal protein S6-A
- Chain l
- 40S ribosomal protein S8-B
- Chain m
- 40S ribosomal protein S9-A
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