J5_8CEH_003

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

8CEH|1|AA|U|719, 8CEH|1|AA|A|784, 8CEH|1|AA|G|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CEH_003 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.0611

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_56629.1

Basepair signature

cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8CEH|1|AA|C|675
8CEH|1|AA|G|676
8CEH|1|AA|A|677
8CEH|1|AA|G|678
*
8CEH|1|AA|C|702
8CEH|1|AA|G|703
8CEH|1|AA|U|704
8CEH|1|AA|A|705
8CEH|1|AA|A|706
*
8CEH|1|AA|U|713
8CEH|1|AA|G|714
8CEH|1|AA|A|715
8CEH|1|AA|A|716
8CEH|1|AA|C|717
8CEH|1|AA|G|718
8CEH|1|AA|U|719
8CEH|1|AA|A|720
8CEH|1|AA|G|721
*
8CEH|1|AA|C|749
8CEH|1|AA|G|750
8CEH|1|AA|A|751
*
8CEH|1|AA|U|782
8CEH|1|AA|A|783
8CEH|1|AA|A|784
8CEH|1|AA|G|785
8CEH|1|AA|A|786
8CEH|1|AA|G|787

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain GG

60S ribosomal protein L4-A

Chain M

60S ribosomal protein L28

Chain N

60S ribosomal protein L29

Chain OO

60S ribosomal protein L13-A

Chain U

60S ribosomal protein L36-A