J5_8CG8_003
3D structure
- PDB id
- 8CG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8CG8|1|AA|U|719, 8CG8|1|AA|A|784, 8CG8|1|AA|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CG8_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0704
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8CG8|1|AA|C|675
8CG8|1|AA|G|676
8CG8|1|AA|A|677
8CG8|1|AA|G|678
*
8CG8|1|AA|C|702
8CG8|1|AA|G|703
8CG8|1|AA|U|704
8CG8|1|AA|A|705
8CG8|1|AA|A|706
*
8CG8|1|AA|U|713
8CG8|1|AA|G|714
8CG8|1|AA|A|715
8CG8|1|AA|A|716
8CG8|1|AA|C|717
8CG8|1|AA|G|718
8CG8|1|AA|U|719
8CG8|1|AA|A|720
8CG8|1|AA|G|721
*
8CG8|1|AA|C|749
8CG8|1|AA|G|750
8CG8|1|AA|A|751
*
8CG8|1|AA|U|782
8CG8|1|AA|A|783
8CG8|1|AA|A|784
8CG8|1|AA|G|785
8CG8|1|AA|A|786
8CG8|1|AA|G|787
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L18-A
- Chain F
- 60S ribosomal protein L21-A
- Chain GG
- 60S ribosomal protein L4-A
- Chain M
- 60S ribosomal protein L28
- Chain N
- 60S ribosomal protein L29
- Chain OO
- 60S ribosomal protein L13-A
- Chain U
- 60S ribosomal protein L36-A
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