J5_8CGN_002

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)

Length

23 nucleotides

Bulged bases

8CGN|1|AA|U|1436

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CGN_002 not in the Motif Atlas

Homologous match to J5_8C3A_002

Geometric discrepancy: 0.0448

The information below is about J5_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGN|1|AA|G|658
8CGN|1|AA|G|659
8CGN|1|AA|A|660
8CGN|1|AA|G|661
8CGN|1|AA|U|662
8CGN|1|AA|OMC|663
*
8CGN|1|AA|G|799
8CGN|1|AA|G|800
8CGN|1|AA|A|801
8CGN|1|AA|C|802
*
8CGN|1|AA|G|941
8CGN|1|AA|U|942
8CGN|1|AA|U|943
8CGN|1|AA|C|944
*
8CGN|1|AA|G|1375
8CGN|1|AA|C|1376
*
8CGN|1|AA|G|1431
8CGN|1|AA|C|1432
8CGN|1|AA|A|1433
8CGN|1|AA|G|1434
8CGN|1|AA|A|1435
8CGN|1|AA|U|1436
8CGN|1|AA|OMC|1437

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain GG

60S ribosomal protein L4-A

Chain M

60S ribosomal protein L28

Chain OO

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L32

Chain QQ

60S ribosomal protein L15-A