3D structure

PDB id
8CGN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Non-rotated 80S S. cerevisiae ribosome with ligands
Experimental method
ELECTRON MICROSCOPY
Resolution
2.28 Å

Loop

Sequence
CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
Length
27 nucleotides
Bulged bases
8CGN|1|AA|U|719, 8CGN|1|AA|A|784, 8CGN|1|AA|G|785
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8CGN_003 not in the Motif Atlas
Homologous match to J5_8P9A_012
Geometric discrepancy: 0.0716
The information below is about J5_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_56629.1
Basepair signature
cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

8CGN|1|AA|C|675
8CGN|1|AA|G|676
8CGN|1|AA|A|677
8CGN|1|AA|G|678
*
8CGN|1|AA|C|702
8CGN|1|AA|G|703
8CGN|1|AA|U|704
8CGN|1|AA|A|705
8CGN|1|AA|A|706
*
8CGN|1|AA|U|713
8CGN|1|AA|G|714
8CGN|1|AA|A|715
8CGN|1|AA|A|716
8CGN|1|AA|C|717
8CGN|1|AA|G|718
8CGN|1|AA|U|719
8CGN|1|AA|A|720
8CGN|1|AA|G|721
*
8CGN|1|AA|C|749
8CGN|1|AA|G|750
8CGN|1|AA|A|751
*
8CGN|1|AA|U|782
8CGN|1|AA|A|783
8CGN|1|AA|A|784
8CGN|1|AA|G|785
8CGN|1|AA|A|786
8CGN|1|AA|G|787

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L18-A
Chain GG
60S ribosomal protein L4-A
Chain M
60S ribosomal protein L28
Chain N
60S ribosomal protein L29
Chain OO
60S ribosomal protein L13-A
Chain U
60S ribosomal protein L36-A

Coloring options:


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