J5_8CGV_004

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8CGV|1|a|U|1758, 8CGV|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CGV_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0306

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CGV|1|a|G|1674
8CGV|1|a|C|1675
8CGV|1|a|A|1676
8CGV|1|a|A|1677
8CGV|1|a|A|1678
8CGV|1|a|A|1679
8CGV|1|a|U|1680
8CGV|1|a|G|1681
8CGV|1|a|G|1682
*
8CGV|1|a|C|1706
8CGV|1|a|G|1707
*
8CGV|1|a|U|1751
8CGV|1|a|C|1752
*
8CGV|1|a|G|1756
8CGV|1|a|A|1757
8CGV|1|a|U|1758
8CGV|1|a|A|1759
8CGV|1|a|C|1760
8CGV|1|a|C|1761
8CGV|1|a|A|1762
8CGV|1|a|G|1763
8CGV|1|a|C|1764
*
8CGV|1|a|G|1988
8CGV|1|a|G|1989
8CGV|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14

Chain o

Large ribosomal subunit protein bL19