J5_8CIV_008

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAGUA*UAACGAGG(A2M)ACAAU*AUAG

Length

40 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|c|C|31
8CIV|1|c|U|32
8CIV|1|c|U|33
8CIV|1|c|G|34
8CIV|1|c|U|35
*
8CIV|1|c|A|473
8CIV|1|c|A|474
8CIV|1|c|A|475
8CIV|1|c|U|476
8CIV|1|c|A|477
8CIV|1|c|A|478
8CIV|1|c|C|479
*
8CIV|1|c|G|509
8CIV|1|c|G|510
8CIV|1|c|A|511
8CIV|1|c|A|512
8CIV|1|c|U|513
8CIV|1|c|G|514
8CIV|1|c|A|515
8CIV|1|c|G|516
8CIV|1|c|U|517
8CIV|1|c|A|518
*
8CIV|1|c|U|533
8CIV|1|c|A|534
8CIV|1|c|A|535
8CIV|1|c|C|536
8CIV|1|c|G|537
8CIV|1|c|A|538
8CIV|1|c|G|539
8CIV|1|c|G|540
8CIV|1|c|A2M|541
8CIV|1|c|A|542
8CIV|1|c|C|543
8CIV|1|c|A|544
8CIV|1|c|A|545
8CIV|1|c|U|546
*
8CIV|1|c|A|592
8CIV|1|c|U|593
8CIV|1|c|A|594
8CIV|1|c|G|595

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A