J5_8CKU_002
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)
- Length
- 23 nucleotides
- Bulged bases
- 8CKU|1|AA|U|1436
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CKU_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0709
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8CKU|1|AA|G|658
8CKU|1|AA|G|659
8CKU|1|AA|A|660
8CKU|1|AA|G|661
8CKU|1|AA|U|662
8CKU|1|AA|OMC|663
*
8CKU|1|AA|G|799
8CKU|1|AA|G|800
8CKU|1|AA|A|801
8CKU|1|AA|C|802
*
8CKU|1|AA|G|941
8CKU|1|AA|U|942
8CKU|1|AA|U|943
8CKU|1|AA|C|944
*
8CKU|1|AA|G|1375
8CKU|1|AA|C|1376
*
8CKU|1|AA|G|1431
8CKU|1|AA|C|1432
8CKU|1|AA|A|1433
8CKU|1|AA|G|1434
8CKU|1|AA|A|1435
8CKU|1|AA|U|1436
8CKU|1|AA|OMC|1437
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain GG
- 60S ribosomal protein L4-A
- Chain M
- 60S ribosomal protein L28
- Chain OO
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L32
- Chain QQ
- 60S ribosomal protein L15-A
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