J5_8CKU_008

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)ACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CKU|1|c|C|31
8CKU|1|c|U|32
8CKU|1|c|U|33
8CKU|1|c|G|34
8CKU|1|c|U|35
*
8CKU|1|c|A|473
8CKU|1|c|A|474
8CKU|1|c|A|475
8CKU|1|c|U|476
8CKU|1|c|A|477
8CKU|1|c|A|478
8CKU|1|c|C|479
*
8CKU|1|c|G|509
8CKU|1|c|G|510
8CKU|1|c|A|511
8CKU|1|c|A|512
8CKU|1|c|U|513
8CKU|1|c|G|514
8CKU|1|c|A|515
8CKU|1|c|G|516
*
8CKU|1|c|C|536
8CKU|1|c|G|537
8CKU|1|c|A|538
8CKU|1|c|G|539
8CKU|1|c|G|540
8CKU|1|c|A2M|541
8CKU|1|c|A|542
8CKU|1|c|C|543
8CKU|1|c|A|544
8CKU|1|c|A|545
8CKU|1|c|U|546
*
8CKU|1|c|A|592
8CKU|1|c|U|593
8CKU|1|c|A|594
8CKU|1|c|G|595

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A