J5_8CMJ_005
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- AGUCGGCAAAAUAG*UG*UG*CGGACAAGG*CACUGU
- Length
- 33 nucleotides
- Bulged bases
- 8CMJ|1|AA|G|2116, 8CMJ|1|AA|G|2121, 8CMJ|1|AA|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CMJ|1|AA|A|1901
8CMJ|1|AA|G|1902
8CMJ|1|AA|U|1903
8CMJ|1|AA|C|1904
8CMJ|1|AA|G|1905
8CMJ|1|AA|G|1906
8CMJ|1|AA|C|1907
8CMJ|1|AA|A|1908
8CMJ|1|AA|A|1909
8CMJ|1|AA|A|1910
8CMJ|1|AA|A|1911
8CMJ|1|AA|U|1912
8CMJ|1|AA|A|1913
8CMJ|1|AA|G|1914
*
8CMJ|1|AA|U|1938
8CMJ|1|AA|G|1939
*
8CMJ|1|AA|U|2109
8CMJ|1|AA|G|2110
*
8CMJ|1|AA|C|2114
8CMJ|1|AA|G|2115
8CMJ|1|AA|G|2116
8CMJ|1|AA|A|2117
8CMJ|1|AA|C|2118
8CMJ|1|AA|A|2119
8CMJ|1|AA|A|2120
8CMJ|1|AA|G|2121
8CMJ|1|AA|G|2122
*
8CMJ|1|AA|C|2331
8CMJ|1|AA|A|2332
8CMJ|1|AA|C|2333
8CMJ|1|AA|U|2334
8CMJ|1|AA|G|2335
8CMJ|1|AA|U|2336
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L19-A
- Chain FF
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L23-A
- Chain I
- 60S ribosomal protein L24-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: