J5_8CRE_005
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8CRE|1|1|A|2382, 8CRE|1|1|A|2789, 8CRE|1|1|U|2845, 8CRE|1|1|G|2846, 8CRE|1|1|U|2950, 8CRE|1|1|U|2951
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_21810.1
- Basepair signature
- cWW-F-tHS-F-F-F-cWW-F-cWW-cWW-F-F-F-F-F-F-cWW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8CRE|1|1|A|2377
8CRE|1|1|G|2378
8CRE|1|1|A|2379
8CRE|1|1|A|2380
8CRE|1|1|G|2381
8CRE|1|1|A|2382
8CRE|1|1|C|2383
8CRE|1|1|C|2384
*
8CRE|1|1|G|2787
8CRE|1|1|G|2788
8CRE|1|1|A|2789
8CRE|1|1|U|2790
8CRE|1|1|A|2791
8CRE|1|1|A|2792
8CRE|1|1|C|2793
8CRE|1|1|U|2794
8CRE|1|1|G|2795
*
8CRE|1|1|C|2839
8CRE|1|1|U|2840
8CRE|1|1|U|2841
8CRE|1|1|C|2842
8CRE|1|1|G|2843
8CRE|1|1|A|2844
8CRE|1|1|U|2845
8CRE|1|1|G|2846
8CRE|1|1|U|2847
8CRE|1|1|C|2848
*
8CRE|1|1|G|2923
8CRE|1|1|G|2924
8CRE|1|1|U|2925
8CRE|1|1|U|2926
8CRE|1|1|U|2927
8CRE|1|1|A|2928
8CRE|1|1|G|2929
*
8CRE|1|1|U|2947
8CRE|1|1|A|2948
8CRE|1|1|G|2949
8CRE|1|1|U|2950
8CRE|1|1|U|2951
8CRE|1|1|U|2952
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AC
- 60S ribosomal protein L29
- Chain j
- 60S ribosomal protein L2-B
- Chain k
- 60S ribosomal protein L3
- Chain l
- 60S ribosomal protein L4-B
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