Loop J5_8CRE

3D structure

PDB id: 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å

Loop

Sequence: AUAGUACCUUACUACUU*AUGCUUAAAA*UG*CGAAUC*GAUGGUU
Length: 42 nucleotides
Bulged bases: 8CRE|1|CM|U|128, 8CRE|1|CM|U|132, 8CRE|1|CM|U|133, 8CRE|1|CM|A|134, 8CRE|1|CM|C|135, 8CRE|1|CM|C|138, 8CRE|1|CM|U|139, 8CRE|1|CM|U|176
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J5_78223.1
Basepair signature: cWW-cWW-tHS-F-F-tWW-cWW-F-F-F-cWW-F-tWS-F-cWW-tWH-F-cWW-F-F-cWW-F-F-F
Number of instances in this motif group: 1

Unit IDs

8CRE|1|CM|A|124
8CRE|1|CM|U|125
8CRE|1|CM|A|126
8CRE|1|CM|G|127
8CRE|1|CM|U|128
8CRE|1|CM|A|129
8CRE|1|CM|C|130
8CRE|1|CM|C|131
8CRE|1|CM|U|132
8CRE|1|CM|U|133
8CRE|1|CM|A|134
8CRE|1|CM|C|135
8CRE|1|CM|U|136
8CRE|1|CM|A|137
8CRE|1|CM|C|138
8CRE|1|CM|U|139
8CRE|1|CM|U|140
*
8CRE|1|CM|A|171
8CRE|1|CM|U|172
8CRE|1|CM|G|173
8CRE|1|CM|C|174
8CRE|1|CM|U|175
8CRE|1|CM|U|176
8CRE|1|CM|A|177
8CRE|1|CM|A|178
8CRE|1|CM|A|179
8CRE|1|CM|A|180
*
8CRE|1|CM|U|201
8CRE|1|CM|G|202
*
8CRE|1|CM|C|261
8CRE|1|CM|G|262
8CRE|1|CM|A|263
8CRE|1|CM|A|264
8CRE|1|CM|U|265
8CRE|1|CM|C|266
*
8CRE|1|CM|G|285
8CRE|1|CM|A|286
8CRE|1|CM|U|287
8CRE|1|CM|G|288
8CRE|1|CM|G|289
8CRE|1|CM|U|290
8CRE|1|CM|U|291

Current chains

Chain CM: 18S

Nearby chains

Chain CR: 40S ribosomal protein S4
Chain CT: 40S ribosomal protein S6
Chain CV: 40S ribosomal protein S8

J5_8CRE_025