Motif J5_78223.1 Version J5_78223.1 of this group appears in releases 3.95 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | break | 20 | 21 | break | 22 | 23 | 24 | 25 | 26 | 27 | break | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 1-34 | 2-32 | 2-33 | 3-32 | 5-19 | 8-25 | 9-13 | 10-11 | 12-25 | 19-20 | 21-22 | 24-30 | 27-28 | ||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8CRE_025 | 8CRE | 0.0000 | 8 | CM | SSU rRNA | A | 124 | U | 125 | A | 126 | G | 127 | A | 129 | C | 130 | C | 131 | U | 136 | A | 137 | U | 140 | * | A | 171 | U | 172 | G | 173 | C | 174 | U | 175 | A | 177 | A | 178 | A | 179 | A | 180 | * | U | 201 | G | 202 | * | C | 261 | G | 262 | A | 263 | A | 264 | U | 265 | C | 266 | * | G | 285 | A | 286 | U | 287 | G | 288 | G | 289 | U | 290 | U | 291 | cWW | ncWWa | cwW | tHS | tWW | ncHW | tWS | cWW | tWH | ncWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAGUACCUUACUACUU*AUGCUUAAAA*UG*CGAAUC*GAUGGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUACCUUACUACU*UGCUUAAA**GAAU*AUGGU | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-cWW-tHS-F-F-tWW-cWW-F-F-F-cWW-F-tWS-F-cWW-tWH-F-cWW-F-F-cWW-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: