J5_8CRX_003
3D structure
- PDB id
- 8CRX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CAAG*CGAACGGG*CAU*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8CRX|1|A|A|109, 8CRX|1|A|C|354
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CRX_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0986
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CRX|1|A|C|62
8CRX|1|A|A|63
8CRX|1|A|A|64
8CRX|1|A|G|65
*
8CRX|1|A|C|106
8CRX|1|A|G|107
8CRX|1|A|A|108
8CRX|1|A|A|109
8CRX|1|A|C|110
8CRX|1|A|G|111
8CRX|1|A|G|112
8CRX|1|A|G|113
*
8CRX|1|A|C|316
8CRX|1|A|A|317
8CRX|1|A|U|318
*
8CRX|1|A|G|339
8CRX|1|A|A|340
8CRX|1|A|C|341
*
8CRX|1|A|G|352
8CRX|1|A|G|353
8CRX|1|A|C|354
8CRX|1|A|A|355
8CRX|1|A|G|356
Current chains
- Chain A
- RNA (1537-MER)
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
- Chain j
- 50S ribosomal protein L14
- Chain o
- 50S ribosomal protein L19
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