J5_8CVK_018

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CVK_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0639

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8CVK|1|2a|C|36
8CVK|1|2a|U|37
8CVK|1|2a|G|38
8CVK|1|2a|G|39
*
8CVK|1|2a|C|403
8CVK|1|2a|U|404
8CVK|1|2a|U|405
8CVK|1|2a|G|406
*
8CVK|1|2a|C|436
8CVK|1|2a|U|437
8CVK|1|2a|G|438
8CVK|1|2a|A|439
8CVK|1|2a|A|441
8CVK|1|2a|C|442
*
8CVK|1|2a|G|492
8CVK|1|2a|G|493
8CVK|1|2a|U|494
8CVK|1|2a|A|495
8CVK|1|2a|A|496
8CVK|1|2a|U|498
8CVK|1|2a|A|499
8CVK|1|2a|G|500
*
8CVK|1|2a|C|545
8CVK|1|2a|G|546
8CVK|1|2a|A|547
8CVK|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12