3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
8CVK|1|2a|A|109, 8CVK|1|2a|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8CVK_019 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.0959
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8CVK|1|2a|C|58
8CVK|1|2a|A|59
8CVK|1|2a|A|60
8CVK|1|2a|G|61
*
8CVK|1|2a|C|106
8CVK|1|2a|G|107
8CVK|1|2a|G|108
8CVK|1|2a|A|109
8CVK|1|2a|C|110
8CVK|1|2a|G|111
8CVK|1|2a|G|112
8CVK|1|2a|G|113
*
8CVK|1|2a|C|314
8CVK|1|2a|A|315
8CVK|1|2a|G|316
*
8CVK|1|2a|C|337
8CVK|1|2a|A|338
8CVK|1|2a|C|339
*
8CVK|1|2a|G|350
8CVK|1|2a|G|351
8CVK|1|2a|C|352
8CVK|1|2a|A|353
8CVK|1|2a|G|354

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2O
50S ribosomal protein L14
Chain 2T
50S ribosomal protein L19
Chain 2p
30S ribosomal protein S16
Chain 2t
30S ribosomal protein S20

Coloring options:


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