3D structure

PDB id
8CVL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
CGACUC*GGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
8CVL|1|2A|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8CVL_013 not in the Motif Atlas
Homologous match to J5_9DFE_004
Geometric discrepancy: 0.0515
The information below is about J5_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

8CVL|1|2A|C|584
8CVL|1|2A|G|585
8CVL|1|2A|A|586
8CVL|1|2A|C|587
8CVL|1|2A|U|588
8CVL|1|2A|C|589
*
8CVL|1|2A|G|668
8CVL|1|2A|G|669
8CVL|1|2A|A|670
8CVL|1|2A|C|671
*
8CVL|1|2A|G|809
8CVL|1|2A|U|810
8CVL|1|2A|U|811
8CVL|1|2A|C|812
*
8CVL|1|2A|G|1195
8CVL|1|2A|C|1196
*
8CVL|1|2A|G|1250
8CVL|1|2A|C|1251
8CVL|1|2A|G|1252
8CVL|1|2A|A|1253
8CVL|1|2A|A|1254
8CVL|1|2A|U|1255
8CVL|1|2A|G|1256

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 28
50S ribosomal protein L35
Chain 2F
50S ribosomal protein L4
Chain 2P
50S ribosomal protein L15
Chain 2U
50S ribosomal protein L20
Chain 2V
50S ribosomal protein L21

Coloring options:


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