3D structure

PDB id
8CVL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
UUUA*UUUG*CG*CG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
8CVL|1|2A|U|2076, 8CVL|1|2A|G|2428, 8CVL|1|2A|G|2429, 8CVL|1|2A|A|2430, 8CVL|1|2A|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8CVL_017 not in the Motif Atlas
Homologous match to J5_9DFE_007
Geometric discrepancy: 0.0474
The information below is about J5_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.1
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

8CVL|1|2A|U|2074
8CVL|1|2A|U|2075
8CVL|1|2A|U|2076
8CVL|1|2A|A|2077
*
8CVL|1|2A|U|2243
8CVL|1|2A|U|2244
8CVL|1|2A|U|2245
8CVL|1|2A|G|2246
*
8CVL|1|2A|C|2258
8CVL|1|2A|G|2259
*
8CVL|1|2A|C|2281
8CVL|1|2A|G|2282
*
8CVL|1|2A|C|2427
8CVL|1|2A|G|2428
8CVL|1|2A|G|2429
8CVL|1|2A|A|2430
8CVL|1|2A|U|2431
8CVL|1|2A|A|2432
8CVL|1|2A|A|2433
8CVL|1|2A|A|2434
8CVL|1|2A|A|2435

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 21
50S ribosomal protein L28
Chain 26
50S ribosomal protein L33
Chain 2D
50S ribosomal protein L2
Chain 2P
50S ribosomal protein L15
Chain 2y
Transfer RNA; tRNA

Coloring options:


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