J5_8CVM_001

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAUGAAG*CGAAUG*UGG*UGGC*GUG

Length

24 nucleotides

Bulged bases

8CVM|1|a|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVM|1|a|C|46
8CVM|1|a|G|47
8CVM|1|a|A|48
8CVM|1|a|U|49
8CVM|1|a|G|50
8CVM|1|a|A|51
8CVM|1|a|A|52
8CVM|1|a|G|53
*
8CVM|1|a|C|115
8CVM|1|a|G|116
8CVM|1|a|A|117
8CVM|1|a|A|118
8CVM|1|a|U|119
8CVM|1|a|G|120
*
8CVM|1|a|U|129
8CVM|1|a|G|130
8CVM|1|a|G|131
*
8CVM|1|a|U|153
8CVM|1|a|G|154
8CVM|1|a|G|155
8CVM|1|a|C|156
*
8CVM|1|a|G|183
8CVM|1|a|U|184
8CVM|1|a|G|185

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23