J5_8CVM_002

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*CAAG

Length

33 nucleotides

Bulged bases

8CVM|1|a|U|324, 8CVM|1|a|U|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVM|1|a|C|275
8CVM|1|a|U|276
8CVM|1|a|A|277
8CVM|1|a|A|278
8CVM|1|a|A|279
8CVM|1|a|C|280
*
8CVM|1|a|G|318
8CVM|1|a|G|319
8CVM|1|a|G|320
8CVM|1|a|U|321
8CVM|1|a|U|322
8CVM|1|a|G|323
8CVM|1|a|U|324
8CVM|1|a|G|325
*
8CVM|1|a|C|458
8CVM|1|a|G|459
8CVM|1|a|A|460
8CVM|1|a|G|461
8CVM|1|a|U|462
8CVM|1|a|A|463
8CVM|1|a|G|464
*
8CVM|1|a|U|488
8CVM|1|a|G|489
8CVM|1|a|A|490
8CVM|1|a|A|491
8CVM|1|a|U|492
8CVM|1|a|C|493
8CVM|1|a|U|494
8CVM|1|a|G|495
*
8CVM|1|a|C|510
8CVM|1|a|A|511
8CVM|1|a|A|512
8CVM|1|a|G|513

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain w

50S ribosomal protein L28