J5_8CVM_005

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GCAAAAUGC*GAC*GGC*GAGUCCAGG*UAC

Length

27 nucleotides

Bulged bases

8CVM|1|a|G|1941, 8CVM|1|a|G|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVM|1|a|G|1858
8CVM|1|a|C|1859
8CVM|1|a|A|1860
8CVM|1|a|A|1861
8CVM|1|a|A|1862
8CVM|1|a|A|1863
8CVM|1|a|U|1864
8CVM|1|a|G|1865
8CVM|1|a|C|1866
*
8CVM|1|a|G|1890
8CVM|1|a|A|1891
8CVM|1|a|C|1892
*
8CVM|1|a|G|1933
8CVM|1|a|G|1934
8CVM|1|a|C|1935
*
8CVM|1|a|G|1939
8CVM|1|a|A|1940
8CVM|1|a|G|1941
8CVM|1|a|U|1942
8CVM|1|a|C|1943
8CVM|1|a|C|1944
8CVM|1|a|A|1945
8CVM|1|a|G|1946
8CVM|1|a|G|1947
*
8CVM|1|a|U|2171
8CVM|1|a|A|2172
8CVM|1|a|C|2173

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19