J5_8CVM_006
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACAG*(OMC)CUCG(2MA)(PSU)GUC*GGUUCAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 8CVM|1|a|A|2245||A, 8CVM|1|a|A|2630, 8CVM|1|a|G|2687, 8CVM|1|a|U|2688, 8CVM|1|a|U|2767, 8CVM|1|a|U|2791||A
- QA status
- Modified nucleotides: H2U, OMC, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CVM|1|a|G|2240
8CVM|1|a|A|2241
8CVM|1|a|A|2242
8CVM|1|a|A|2243
8CVM|1|a|G|2244||A
8CVM|1|a|A|2245||A
8CVM|1|a|C|2246||A
8CVM|1|a|C|2247
*
8CVM|1|a|G|2628
8CVM|1|a|G|2629
8CVM|1|a|A|2630
8CVM|1|a|H2U|2631
8CVM|1|a|A|2632
8CVM|1|a|A|2633
8CVM|1|a|C|2634
8CVM|1|a|A|2635
8CVM|1|a|G|2636
*
8CVM|1|a|OMC|2680
8CVM|1|a|C|2681
8CVM|1|a|U|2682
8CVM|1|a|C|2683
8CVM|1|a|G|2684
8CVM|1|a|2MA|2685
8CVM|1|a|PSU|2686
8CVM|1|a|G|2687
8CVM|1|a|U|2688
8CVM|1|a|C|2689
*
8CVM|1|a|G|2764
8CVM|1|a|G|2765
8CVM|1|a|U|2766
8CVM|1|a|U|2767
8CVM|1|a|C|2768
8CVM|1|a|A|2769
8CVM|1|a|G|2770
*
8CVM|1|a|C|2788
8CVM|1|a|G|2789
8CVM|1|a|G|2790
8CVM|1|a|U|2791||A
8CVM|1|a|C|2792||A
8CVM|1|a|C|2793||A
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain C
- Transfer RNA; tRNA
- Chain c
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L3
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain l
- 50S ribosomal protein L16
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
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