J5_8E30_004

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8E30|1|I|U|1758, 8E30|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E30_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0418

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8E30|1|I|G|1674
8E30|1|I|C|1675
8E30|1|I|A|1676
8E30|1|I|A|1677
8E30|1|I|A|1678
8E30|1|I|A|1679
8E30|1|I|U|1680
8E30|1|I|G|1681
8E30|1|I|G|1682
*
8E30|1|I|C|1706
8E30|1|I|G|1707
*
8E30|1|I|U|1751
8E30|1|I|C|1752
*
8E30|1|I|G|1756
8E30|1|I|A|1757
8E30|1|I|U|1758
8E30|1|I|A|1759
8E30|1|I|C|1760
8E30|1|I|C|1761
8E30|1|I|A|1762
8E30|1|I|G|1763
8E30|1|I|C|1764
*
8E30|1|I|G|1988
8E30|1|I|G|1989
8E30|1|I|C|1990

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3