J5_8E45_004

3D structure

PDB id

8E45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC17

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8E45|1|I|U|1758, 8E45|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E45_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0829

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8E45|1|I|G|1674
8E45|1|I|C|1675
8E45|1|I|A|1676
8E45|1|I|A|1677
8E45|1|I|A|1678
8E45|1|I|A|1679
8E45|1|I|U|1680
8E45|1|I|G|1681
8E45|1|I|G|1682
*
8E45|1|I|C|1706
8E45|1|I|G|1707
*
8E45|1|I|U|1751
8E45|1|I|C|1752
*
8E45|1|I|G|1756
8E45|1|I|A|1757
8E45|1|I|U|1758
8E45|1|I|A|1759
8E45|1|I|C|1760
8E45|1|I|C|1761
8E45|1|I|A|1762
8E45|1|I|G|1763
8E45|1|I|C|1764
*
8E45|1|I|G|1988
8E45|1|I|G|1989
8E45|1|I|C|1990

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3