J5_8E46_002

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

8E46|1|I|A|532, 8E46|1|I|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E46_002 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.1005

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8E46|1|I|C|531
8E46|1|I|A|532
8E46|1|I|G|533
*
8E46|1|I|C|560
8E46|1|I|G|561
8E46|1|I|U|562
8E46|1|I|A|563
8E46|1|I|C|564
*
8E46|1|I|G|577
8E46|1|I|G|578
8E46|1|I|G|579
*
8E46|1|I|C|1261
8E46|1|I|A|1262
*
8E46|1|I|U|2017
8E46|1|I|G|2018

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L32