J5_8E48_004

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8E48|1|I|U|1758, 8E48|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E48_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1195

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8E48|1|I|G|1674
8E48|1|I|C|1675
8E48|1|I|A|1676
8E48|1|I|A|1677
8E48|1|I|A|1678
8E48|1|I|A|1679
8E48|1|I|U|1680
8E48|1|I|G|1681
8E48|1|I|G|1682
*
8E48|1|I|C|1706
8E48|1|I|G|1707
*
8E48|1|I|U|1751
8E48|1|I|C|1752
*
8E48|1|I|G|1756
8E48|1|I|A|1757
8E48|1|I|U|1758
8E48|1|I|A|1759
8E48|1|I|C|1760
8E48|1|I|C|1761
8E48|1|I|A|1762
8E48|1|I|G|1763
8E48|1|I|C|1764
*
8E48|1|I|G|1988
8E48|1|I|G|1989
8E48|1|I|C|1990

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3