J5_8E5T_002
3D structure
- PDB id
- 8E5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUCAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAGAGUCGA*UCUAAGUG*UAAAG
- Length
- 53 nucleotides
- Bulged bases
- 8E5T|1|1|U|117, 8E5T|1|1|G|120, 8E5T|1|1|A|121, 8E5T|1|1|U|147, 8E5T|1|1|G|156, 8E5T|1|1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8E5T|1|1|C|111
8E5T|1|1|U|112
8E5T|1|1|C|113
8E5T|1|1|A|114
8E5T|1|1|A|115
8E5T|1|1|A|116
8E5T|1|1|U|117
8E5T|1|1|U|118
8E5T|1|1|U|119
8E5T|1|1|G|120
8E5T|1|1|A|121
8E5T|1|1|A|122
8E5T|1|1|A|123
8E5T|1|1|U|124
*
8E5T|1|1|A|144
8E5T|1|1|G|145
8E5T|1|1|U|146
8E5T|1|1|U|147
8E5T|1|1|G|148
8E5T|1|1|U|149
8E5T|1|1|A|150
8E5T|1|1|A|151
8E5T|1|1|U|152
8E5T|1|1|U|153
8E5T|1|1|U|154
8E5T|1|1|G|155
8E5T|1|1|G|156
8E5T|1|1|A|157
8E5T|1|1|G|158
*
8E5T|1|1|C|263
8E5T|1|1|G|264
8E5T|1|1|A|265
8E5T|1|1|A|266
8E5T|1|1|G|267
8E5T|1|1|A|268
8E5T|1|1|G|269
8E5T|1|1|U|270
8E5T|1|1|C|271
8E5T|1|1|G|272
8E5T|1|1|A|273
*
8E5T|1|1|U|292
8E5T|1|1|C|293
8E5T|1|1|U|294
8E5T|1|1|A|295
8E5T|1|1|A|296
8E5T|1|1|G|297
8E5T|1|1|U|298
8E5T|1|1|G|299
*
8E5T|1|1|U|316
8E5T|1|1|A|317
8E5T|1|1|A|318
8E5T|1|1|A|319
8E5T|1|1|G|320
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain b
- Ribosome biogenesis protein BRX1
- Chain i
- 60S ribosomal protein L36-A
- Chain p
- ATP-dependent RNA helicase HAS1
- Chain s
- Ribosome biogenesis protein ERB1
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