J5_8EKC_002
3D structure
- PDB id
- 8EKC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8EKC|1|A|A|532, 8EKC|1|A|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8EKC_002 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.1134
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8EKC|1|A|C|531
8EKC|1|A|A|532
8EKC|1|A|G|533
*
8EKC|1|A|C|560
8EKC|1|A|G|561
8EKC|1|A|U|562
8EKC|1|A|A|563
8EKC|1|A|C|564
*
8EKC|1|A|G|577
8EKC|1|A|G|578
8EKC|1|A|G|579
*
8EKC|1|A|C|1261
8EKC|1|A|A|1262
*
8EKC|1|A|U|2017
8EKC|1|A|G|2018
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L20
- Chain T
- Ribosomal protein L21
- Chain U
- 50S ribosomal protein L22
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