J5_8EKC_009

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8EKC|1|a|A|109, 8EKC|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EKC_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1256

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8EKC|1|a|C|58
8EKC|1|a|A|59
8EKC|1|a|A|60
8EKC|1|a|G|61
*
8EKC|1|a|C|106
8EKC|1|a|G|107
8EKC|1|a|G|108
8EKC|1|a|A|109
8EKC|1|a|C|110
8EKC|1|a|G|111
8EKC|1|a|G|112
8EKC|1|a|G|113
*
8EKC|1|a|C|314
8EKC|1|a|A|315
8EKC|1|a|C|316
*
8EKC|1|a|G|337
8EKC|1|a|A|338
8EKC|1|a|C|339
*
8EKC|1|a|G|350
8EKC|1|a|G|351
8EKC|1|a|C|352
8EKC|1|a|A|353
8EKC|1|a|G|354

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20