3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
8EMM|1|a|U|1758, 8EMM|1|a|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8EMM_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.037
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8EMM|1|a|G|1674
8EMM|1|a|C|1675
8EMM|1|a|A|1676
8EMM|1|a|A|1677
8EMM|1|a|A|1678
8EMM|1|a|A|1679
8EMM|1|a|U|1680
8EMM|1|a|G|1681
8EMM|1|a|G|1682
*
8EMM|1|a|C|1706
8EMM|1|a|G|1707
*
8EMM|1|a|U|1751
8EMM|1|a|C|1752
*
8EMM|1|a|G|1756
8EMM|1|a|A|1757
8EMM|1|a|U|1758
8EMM|1|a|A|1759
8EMM|1|a|C|1760
8EMM|1|a|C|1761
8EMM|1|a|A|1762
8EMM|1|a|G|1763
8EMM|1|a|C|1764
*
8EMM|1|a|G|1988
8EMM|1|a|G|1989
8EMM|1|a|C|1990

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain d
50S ribosomal protein L3
Chain j
50S ribosomal protein L14
Chain o
50S ribosomal protein L19

Coloring options:


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