J5_8EUB_002
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)
- Length
- 23 nucleotides
- Bulged bases
- 8EUB|1|A1|U|1436
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8EUB_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0413
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EUB|1|A1|G|658
8EUB|1|A1|G|659
8EUB|1|A1|A|660
8EUB|1|A1|G|661
8EUB|1|A1|U|662
8EUB|1|A1|OMC|663
*
8EUB|1|A1|G|799
8EUB|1|A1|G|800
8EUB|1|A1|A|801
8EUB|1|A1|C|802
*
8EUB|1|A1|G|941
8EUB|1|A1|U|942
8EUB|1|A1|U|943
8EUB|1|A1|C|944
*
8EUB|1|A1|G|1375
8EUB|1|A1|C|1376
*
8EUB|1|A1|G|1431
8EUB|1|A1|C|1432
8EUB|1|A1|A|1433
8EUB|1|A1|G|1434
8EUB|1|A1|A|1435
8EUB|1|A1|U|1436
8EUB|1|A1|OMC|1437
Current chains
- Chain A1
- 28S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- RPL4A isoform 1
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ae
- RPL32 isoform 1
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