J5_8EV6_018

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EV6_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0833

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8EV6|1|2a|C|36
8EV6|1|2a|U|37
8EV6|1|2a|G|38
8EV6|1|2a|G|39
*
8EV6|1|2a|C|403
8EV6|1|2a|U|404
8EV6|1|2a|U|405
8EV6|1|2a|G|406
*
8EV6|1|2a|C|436
8EV6|1|2a|U|437
8EV6|1|2a|G|438
8EV6|1|2a|A|439
8EV6|1|2a|A|441
8EV6|1|2a|C|442
*
8EV6|1|2a|G|492
8EV6|1|2a|G|493
8EV6|1|2a|U|494
8EV6|1|2a|A|495
8EV6|1|2a|A|496
8EV6|1|2a|U|498
8EV6|1|2a|A|499
8EV6|1|2a|G|500
*
8EV6|1|2a|C|545
8EV6|1|2a|G|546
8EV6|1|2a|A|547
8EV6|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12