J5_8EV7_018

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EV7_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0856

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8EV7|1|2a|C|36
8EV7|1|2a|U|37
8EV7|1|2a|G|38
8EV7|1|2a|G|39
*
8EV7|1|2a|C|403
8EV7|1|2a|U|404
8EV7|1|2a|U|405
8EV7|1|2a|G|406
*
8EV7|1|2a|C|436
8EV7|1|2a|U|437
8EV7|1|2a|G|438
8EV7|1|2a|A|439
8EV7|1|2a|A|441
8EV7|1|2a|C|442
*
8EV7|1|2a|G|492
8EV7|1|2a|G|493
8EV7|1|2a|U|494
8EV7|1|2a|A|495
8EV7|1|2a|A|496
8EV7|1|2a|U|498
8EV7|1|2a|A|499
8EV7|1|2a|G|500
*
8EV7|1|2a|C|545
8EV7|1|2a|G|546
8EV7|1|2a|A|547
8EV7|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12