Loop J5_8EVP

3D structure

PDB id: 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
Length: 41 nucleotides
Bulged bases: 8EVP|1|B5|U|128, 8EVP|1|B5|U|134, 8EVP|1|B5|A|135, 8EVP|1|B5|C|136, 8EVP|1|B5|U|137, 8EVP|1|B5|A|140, 8EVP|1|B5|U|141, 8EVP|1|B5|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8EVP|1|B5|A|124
8EVP|1|B5|U|125
8EVP|1|B5|A|126
8EVP|1|B5|G|127
8EVP|1|B5|U|128
8EVP|1|B5|U|129
8EVP|1|B5|C|130
8EVP|1|B5|C|131
8EVP|1|B5|U|132
8EVP|1|B5|U|133
8EVP|1|B5|U|134
8EVP|1|B5|A|135
8EVP|1|B5|C|136
8EVP|1|B5|U|137
8EVP|1|B5|A|138
8EVP|1|B5|C|139
8EVP|1|B5|A|140
8EVP|1|B5|U|141
8EVP|1|B5|G|142
8EVP|1|B5|G|143
*
8EVP|1|B5|C|172
8EVP|1|B5|A|173
8EVP|1|B5|U|174
8EVP|1|B5|G|175
8EVP|1|B5|C|176
8EVP|1|B5|U|177
8EVP|1|B5|U|178
8EVP|1|B5|A|179
8EVP|1|B5|A|180
8EVP|1|B5|A|181
8EVP|1|B5|A|182
*
8EVP|1|B5|U|203
8EVP|1|B5|G|204
*
8EVP|1|B5|C|263
8EVP|1|B5|G|264
8EVP|1|B5|A|265
*
8EVP|1|B5|U|289
8EVP|1|B5|G|290
8EVP|1|B5|G|291
8EVP|1|B5|U|292
8EVP|1|B5|U|293

Current chains

Chain B5: 18S rRNA

Nearby chains

Chain BE: 40S ribosomal protein S4-A
Chain BG: 40S ribosomal protein S6-A
Chain BI: 40S ribosomal protein S8-A

J5_8EVP_009