J5_8EVP_011
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- ACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU
- Length
- 48 nucleotides
- Bulged bases
- 8EVP|1|B5|U|693, 8EVP|1|B5|C|695, 8EVP|1|B5|C|696, 8EVP|1|B5|A|739, 8EVP|1|B5|U|741, 8EVP|1|B5|U|812, 8EVP|1|B5|G|814, 8EVP|1|B5|A|855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EVP|1|B5|A|636
8EVP|1|B5|C|637
8EVP|1|B5|U|638
8EVP|1|B5|U|639
8EVP|1|B5|U|640
8EVP|1|B5|G|641
*
8EVP|1|B5|U|692
8EVP|1|B5|U|693
8EVP|1|B5|U|694
8EVP|1|B5|C|695
8EVP|1|B5|C|696
8EVP|1|B5|U|697
8EVP|1|B5|U|698
8EVP|1|B5|C|699
*
8EVP|1|B5|G|737
8EVP|1|B5|G|738
8EVP|1|B5|A|739
8EVP|1|B5|C|740
8EVP|1|B5|U|741
8EVP|1|B5|U|742
8EVP|1|B5|U|743
*
8EVP|1|B5|A|806
8EVP|1|B5|U|807
8EVP|1|B5|A|808
8EVP|1|B5|G|809
8EVP|1|B5|A|810
8EVP|1|B5|A|811
8EVP|1|B5|U|812
8EVP|1|B5|A|813
8EVP|1|B5|G|814
8EVP|1|B5|G|815
8EVP|1|B5|A|816
8EVP|1|B5|C|817
8EVP|1|B5|G|818
8EVP|1|B5|U|819
8EVP|1|B5|U|820
8EVP|1|B5|U|821
*
8EVP|1|B5|A|849
8EVP|1|B5|U|850
8EVP|1|B5|C|851
8EVP|1|B5|G|852
8EVP|1|B5|U|853
8EVP|1|B5|A|854
8EVP|1|B5|A|855
8EVP|1|B5|U|856
8EVP|1|B5|G|857
8EVP|1|B5|A|858
8EVP|1|B5|U|859
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain BE
- 40S ribosomal protein S4-A
- Chain BH
- 40S ribosomal protein S7-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- RPS22A isoform 1
Coloring options: